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BioInterchange

Interchange data using the Resource Description Framework (RDF) and let BioInterchange automagically create RDF triples from your TSV, XML, GFF3, GVF, VCF, Newick and other files. BioInterchange helps you transform your data sets into linked data for sharing and data integration via command line, web-service, or API.

Shell Tool

Create RDF files from large data sets using the BioInterchange shell tool. It is installed as a Ruby gem that works with Mac OS X, Linux and Windows.

Check out how the shell tool turns data into RDF using a single command line call, how the data can be loaded into a triple store, and how to use a semantic reasoner to verify your data consistency!

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Ontologies

Reuse ontologies that we specifically developed to tackle some RDFizations. External ontologies that are used by BioInterchange are listed here too.

Incorporate the ontologies into your own projects and get easy programmatic access to them using the BioInterchange vocabulary wrappers!

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